Microbiome Research Services

From clinical study design to validated results. We work with researchers, startups and established companies to deliver microbiome insights, whether you need a full study managed or precision measurement for your own research.

We run the study. You get the results.

Why REM?

Microbiome expertise

We work at the intersection of biology and measurement, helping you build assays that answer the right question

Precision technology

ATGC distinguishes closely related organisms at single-nucleotide resolution, going beyond what conventional sequencing can achieve

Regulatory awareness

Quality-controlled validation protocols suitable for CE marking, clinical implementation and commercial product development

Flexible collaboration models

From exploratory projects to long-term development partnerships, we adapt to your timeline and internal capabilities.

Proven track record

Developed CE-marked commercial assays and supported multiple European research consortia including Horizon Europe projects

How We Work With You

Three collaboration models, depending on project scope and existing capabilities.

Full study

1

Clinical Study Services

A product ready for clinical validation. Evidence needed for regulatory submission, marketing claims or peer-reviewed publication. One team manages the entire study and delivers results with complete data ownership.

outcomes

  • A published peer-reviewed study
  • Evidence package for regulatory submission
  • Claims backed by rigorous data

the process

  • Protocol designed collaboratively around the research question
  • Ethics, recruitment and participant management
  • Samples collected on site or via validated at-home kits
  • Microbiome analysis and statistics
  • Pubblication support

applies to

A product awaiting validation, without internal clinical operations.
A study required in a geography without local presence.
Microbiome endpoints needed, without measurement infrastructure.
Regulatory-grade evidence required for EFSA, ANVISA or similar.

analysis only

2

Research Collaboration

Research already underway. Microbiome data required but measurement capability not sufficient. A scientific collaborator integrates with the existing team, contributing with expertise, not just processing samples.

outcomes

  • Microbiome data integrated into the existing study
  • Scientific partnership, not transactional service
  • Co-authorship on publications

the process

  • Collection protocols designed for the specific study sites
  • Sample logistics and chain of custody handled
  • Data delivered in formats ready for statistical analysis
  • Interpretation support and methods drafting available

applies to

An ongoing trial that would benefit from microbiome endpoints.
Clinical infrastructure in place, without microbiome capability.
A Horizon Europe or nationally funded consortium seeking a specialist.
Preference for long-term scientific collaboration.

assay development

3

Custom Assay Development

A measurement need that existing panels cannot address. A proprietary strain to track, a pathogen variant to distinguish, a microbial signature to quantify. Precision tools developed for the specific question.

outcomes

  • A validated assay for the specific targets
  • Performance documentation for regulators or QA
  • Flexibility to run in-house or as a managed service

the process

  • Research question and success criteria defined upfront
  • Genetic markers selected and prototype developed
  • Performance validated against agreed specifications
  • Full documentation and team training provided

applies to

A detection need that commercial panels do not cover.
A diagnostic product requiring a validated underlying assay.
A proprietary strain to track through complex matrices.
A requirement for defensible and publication-ready validation.

Application Areas

Targeted microbiome measurement for product development, research and clinical use cases.

Microbiome Product Development

Probiotic validation

Track strain engraftment, quantify effects, demonstrate durability across cohorts and conditions

Prebiotic optimization

Measure how individual bacterial species respond to candidate prebiotic formulations

Personalized nutrition

Generate quantitative microbiome readouts that support evidence-based recommendations

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Food & Agriculture

Soil & plant microbiome

Validate bioinoculant products, optimize field interventions and track targeted microbial populations

Product authentication

Verify origins, detect adulteration using targeted microbial signatures

Quality control

Monitor microbial composition to support consistent manufacturing and compliance

Clinical & Diagnostic Applications

Pathogen detection

Distinguish pathogenic from commensal variants of closely related species

AMR monitoring

Detect and quantify antimicrobial resistance variants for surveillance programs and research studies

Disease profiling

Characterize microbiome composition to support disease research and diagnostic development

Interested in Exploring a Collaboration?

Whether planning a clinical study, adding microbiome endpoints to ongoing research or exploring custom assay development, we’re ready to discuss your project.